[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 35 items for (author: calvo & o)

EMDB-26735:
Hantavirus ANDV Gn(H) protein in complex with 2 Fabs ANDV-5 and ANDV-34
Method: single particle / : Binshtein E, Crowe JE

EMDB-26736:
Hantavirus MAPV Gn(H)/Gc protein in complex with 2 Fabs SNV-24 and SNV-53
Method: single particle / : Binshtein E, Crowe JE

EMDB-27318:
CryoEM structure of Hantavirus ANDV Gn(H) protein complex with 2Fabs ANDV-5 and ANDV-34
Method: single particle / : Binshtein E, Crowe JE

PDB-8dbz:
CryoEM structure of Hantavirus ANDV Gn(H) protein complex with 2Fabs ANDV-5 and ANDV-34
Method: single particle / : Binshtein E, Crowe JE

EMDB-29245:
Cryo-EM structure of native mosquito salivary gland surface protein 1 (SGS1)
Method: single particle / : Liu S, Xia X, Calvo E, Zhou ZH

PDB-8fjp:
Cryo-EM structure of native mosquito salivary gland surface protein 1 (SGS1)
Method: single particle / : Liu S, Xia X, Calvo E, Zhou ZH

EMDB-13889:
SARS-CoV-2 Spike in complex with the neutralizing nanobody VHH-12
Method: single particle / : Guardado-Calvo P, Fernandez I, Rey FA

EMDB-13890:
SARS-CoV-2 Spike in complex with the neutralizing nanobody VHH-G09
Method: single particle / : Guardado-Calvo P, Fernandez I, Rey FA

EMDB-13891:
SARS-CoV-2 Spike in complex with the neutralizing nanobody VHH-F04
Method: single particle / : Guardado-Calvo P, Fernandez I, Rey FA

EMDB-14853:
SARS-CoV-2 Spike in complex with the neutralizing antibody Cv2.1169
Method: single particle / : Guardado-Calvo P, Fernandez I, Rey FA

EMDB-30465:
Cryo-EM structure of dengue virus serotype 2 in complex with the scFv fragment of the broadly neutralizing antibody EDE1 C10
Method: single particle / : Zhang X, Sharma A, Duquerroy S, Zhou ZH, Rey FA

PDB-7cth:
Cryo-EM structure of dengue virus serotype 2 in complex with the scFv fragment of the broadly neutralizing antibody EDE1 C10
Method: single particle / : Zhang X, Sharma A, Duquerroy S, Zhou ZH, Rey FA

EMDB-12018:
VAR2CSA full ectodomain in present of plCS, DBL1-DBL4
Method: single particle / : Wang KT, Dagil R, Gourdon PE, Salanti A

EMDB-12477:
Cryo-EM structure of VAR2CSA FCR3 domain DBL5/6
Method: single particle / : Wang KT, Dagil R, Salanti A, Gourdon PE

PDB-7b54:
VAR2CSA full ectodomain in present of plCS, DBL1-DBL4
Method: single particle / : Wang KT, Dagil R, Gourdon PE, Salanti A

PDB-7nnh:
Cryo-EM structure of VAR2CSA FCR3 domain DBL5/6
Method: single particle / : Wang KT, Dagil R, Salanti A, Gourdon PE

EMDB-12017:
VAR2CSA full ectodomain
Method: single particle / : Wang KT, Gourdon PE, Dagil R, Salanti A

PDB-7b52:
VAR2CSA full ectodomain
Method: single particle / : Wang KT, Gourdon PE, Dagil R, Salanti A

EMDB-11236:
Reconstruction of Tula virus surface glycoprotein lattice
Method: subtomogram averaging / : Stass R, Li S, Huiskonen JT

PDB-6zjm:
Atomic model of Andes virus glycoprotein spike tetramer generated by fitting into a Tula virus reconstruction
Method: subtomogram averaging / : Stass R, Huiskonen JT, Rey F, Guardado-Calvo P

EMDB-10373:
CryoEM structure for Turnip mosaic virus (TuMV)
Method: helical / : Valle MV, Cuesta R

EMDB-10374:
CryoEM structure for viral like particles (VLPs) of Turnip mosaic virus (TuMV).
Method: helical / : Valle M, Cuesta R

PDB-6t34:
Atomic model for Turnip mosaic virus (TuMV)
Method: helical / : Valle MV, Cuesta R

EMDB-4867:
Sub-tomogram averaging of Tula virus glycoprotein spike
Method: subtomogram averaging / : Huiskonen JT, Stass R, Li S

EMDB-0146:
Yeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD)
Method: single particle / : Sanz-Murillo M, Xu J, Gil-Carton D, Wang D, Fernandez-Tornero C

EMDB-0147:
Yeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD) with fully-ordered A49
Method: single particle / : Sanz-Murillo M, Xu J, Gil-Carton D, Wang D, Fernandez-Tornero C

PDB-6h67:
Yeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD)
Method: single particle / : Sanz-Murillo M, Xu J, Gil-Carton D, Wang D, Fernandez-Tornero C

PDB-6h68:
Yeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD) with fully-ordered A49
Method: single particle / : Sanz-Murillo M, Xu J, Gil-Carton D, Wang D, Fernandez-Tornero C

EMDB-4086:
RNA polymerase I-Rrn3 complex
Method: single particle / : Torreira E, Louro JA, Gil-Carton D, Gallego O, Calvo O, Fernandez-Tornero C

EMDB-4087:
Monomeric RNA polymerase I at 5.6 A resolution
Method: single particle / : Torreira E, Louro JA, Gil-Carton D, Gallego O, Calvo O, Fernandez-Tornero C

EMDB-4088:
Monomeric RNA polymerase I at 4.9 A resolution
Method: single particle / : Torreira E, Louro JA, Gil-Carton D, Gallego O, Calvo O, Fernandez-Tornero C

PDB-5lmx:
Monomeric RNA polymerase I at 4.9 A resolution
Method: single particle / : Torreira E, Louro JA, Gil-Carton D, Gallego O, Calvo O, Fernandez-Tornero C

EMDB-2332:
Structural insights into the chaperone activity of Hsp40: DnaJ binds and remodels RepE
Method: single particle / : Cuellar J, Perales-Calvo J, Muga A, Valpuesta JM, Moro F

EMDB-2333:
Structural insights into the chaperone activity of Hsp40: DnaJ binds and remodels RepE
Method: single particle / : Cuellar J, Perales-Calvo J, Muga A, Valpuesta JM, Moro F

EMDB-2334:
Structural insights into the chaperone activity of Hsp40: DnaJ binds and remodels RepE
Method: single particle / : Cuellar J, Perales-Calvo J, Muga A, Valpuesta JM, Moro F

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more